Publications

788 results for Life Sciences

A foundation model for learning genetic associations from brain imaging phenotypes
- - Diego Machado Reyes
  - Myson Burch
  - et al.
- 2025
- Bioinformatics Advances
AutoPeptideML 2: An open source library for democratizing machine learning for peptide bioactivity prediction
- - Raúl Fernández Díaz
  - Lam Thanh Hoang
  - et al.
- 2025
- ISMB 2025
Improving Transcriptomic Foundation Models Through Gene-Level Error Analysis and Adaptive Masking
- - Michael Morris Danziger
  - Bharath Dandala
  - et al.
- 2025
- ISMB 2025
BioVERSE: A Modular Framework for Integrating Biomedical Modalities with Language Models in Precision Medicine
- - Ching-Huei Tsou
  - Michal Ozery-Flato
  - et al.
- 2025
- ISMB 2025
Agentic AI for bioinformatics workflows
- - Jennifer Kelly
  - Ashley Evans
  - et al.
- 2025
- ISMB 2025
Designing a Multi-Agent AI Framework to Mine Scientific Literature and Experiment Datasets to Support and Enrich Single-Cell Analyses
- - Joao Bettencourt-Silva
  - Natasha Mulligan
  - et al.
- 2025
- ISMB 2025
DOES YOUR MODEL UNDERSTAND GENES? A MODALITY-AGNOSTIC BENCHMARK OF GENE PROPERTIES
- - Yoav Kan-Tor
  - Michael Morris Danziger
  - et al.
- 2025
- ISMB 2025
Transcriptomic Foundation Model Evaluation: Quantifying Expression Level Discrimination Through Null Sample Testing
- - Noa Moriel
  - Michael Morris Danziger
  - et al.
- 2025
- ISMB 2025
Aligning Protein Conformation Ensemble Generation with Physical Feedback
- - Jiarui Lu
  - Xiaoyin Chen
  - et al.
- 2025
- ICML 2025
Learning interpretable positional encodings in transformers depends on initialization
- - Taku Ito
  - Luca Cocchi
  - et al.
- 2025
- ICML 2025