Transformer Model for Structure Elucidation from Tandem Mass Spectroscopy dataLaura MismettiMarvin Albertset al.2025ACS Fall 2025
AI-driven prediction of monoclonal antibody binding and activity against influenza A virusMichal Ozery-FlatoElla Barkanet al.2025ACS Fall 2025
Spectra to Molecule: A Multimodal Multitasking Transformer Model for Automated Structure ElucidationMarvin AlbertsTeodoro Laino2025ACS Fall 2025
AutoPeptideML 2: An open source library for democratizing machine learning for peptide bioactivity predictionRaúl Fernández DíazLam Thanh Hoanget al.2025ISMB 2025
Transcriptomic Foundation Model Evaluation: Quantifying Expression Level Discrimination Through Null Sample TestingNoa MorielMichael Morris Danzigeret al.2025ISMB 2025
BioVERSE: A Modular Framework for Integrating Biomedical Modalities with Language Models in Precision MedicineChing-Huei TsouMichal Ozery-Flatoet al.2025ISMB 2025
DOES YOUR MODEL UNDERSTAND GENES? A MODALITY-AGNOSTIC BENCHMARK OF GENE PROPERTIESYoav Kan-TorMichael Morris Danzigeret al.2025ISMB 2025
Improving Transcriptomic Foundation Models Through Gene-Level Error Analysis and Adaptive MaskingMichael Morris DanzigerBharath Dandalaet al.2025ISMB 2025
Designing a Multi-Agent AI Framework to Mine Scientific Literature and Experiment Datasets to Support and Enrich Single-Cell AnalysesJoao Bettencourt-SilvaNatasha Mulliganet al.2025ISMB 2025