Publications

843 results for Foundation Models

Agentic AI for bioinformatics workflows
- - Jennifer Kelly
  - Ashley Evans
  - et al.
- 2025
- ISMB 2025
Poster
DOES YOUR MODEL UNDERSTAND GENES? A MODALITY-AGNOSTIC BENCHMARK OF GENE PROPERTIES
- - Yoav Kan-Tor
  - Michael Morris Danziger
  - et al.
- 2025
- ISMB 2025
Poster
BioVERSE: A Modular Framework for Integrating Biomedical Modalities with Language Models in Precision Medicine
- - Ching-Huei Tsou
  - Michal Ozery-Flato
  - et al.
- 2025
- ISMB 2025
Poster
Harnessing biomedical foundation models for genomic feature engineering to investigate patient drug response
- - Laura Gardiner
  - Stephen Checkley
  - et al.
- 2025
- ISMB 2025
Poster
Transcriptomic Foundation Model Evaluation: Quantifying Expression Level Discrimination Through Null Sample Testing
- - Noa Moriel
  - Michael Morris Danziger
  - et al.
- 2025
- ISMB 2025
Poster
Investigating Materials at Nanoscale with AI and Quantum Computing
- - Mathias Steiner
- 2025
- EB Nanobiossistemas 2025
Keynote
Foundation Molecular Grammar: Multi-Modal Foundation Models Induce Interpretable Molecular Graph Languages
- - Michael Sun
  - Weize Yuan
  - et al.
- 2025
- ICML 2025
Conference paper
SPRI: Aligning Large Language Models with Context-Situated Principles
- - Hongli Zhan
  - Muneeza Azmat
  - et al.
- 2025
- ICML 2025
Conference paper
Speculate, then Collaborate: Fusing Knowledge of Language Models during Decoding
- - Ziyao Wang
  - Muneeza Azmat
  - et al.
- 2025
- ICML 2025
Conference paper
Compress then Serve: Serving Thousands of LoRA Adapters with Little Overhead
- - Rickard Gabrielsson
  - Jiacheng Zhu
  - et al.
- 2025
- ICML 2025
Conference paper