Empress enables tree-guided, interactive, and exploratory analyses of multi-omic data sets
- Kalen Cantrell
- Marcus W. Fedarko
- et al.
- 2021
- mSystems
Publications
35 results for Niina Haiminen
Explainable AI reveals changes in skin microbiome composition linked to phenotypic differences
- Anna Paola Carrieri
- Niina Haiminen
- et al.
- 2021
- Scientific Reports
Monitoring the microbiome for food safety and quality using deep shotgun sequencing
- Kristen L. Beck
- Niina Haiminen
- et al.
- 2021
- npj Science of Food
Re-purposing software for functional characterization of the microbiome
- Laura-Jayne Gardiner
- Niina Haiminen
- et al.
- 2021
- Microbiome
Hierarchically Labeled Database Indexing Allows Scalable Characterization of Microbiomes
- Filippo Utro
- Niina Haiminen
- et al.
- 2020
- iScience
Human skin, oral, and gut microbiomes predict chronological age
- Shi Huang
- Niina Haiminen
- et al.
- 2020
- mSystems
Food authentication from shotgun sequencing reads with an application on high protein powders
- Niina Haiminen
- Stefan Edlund
- et al.
- 2019
- npj Science of Food
Linear time algorithms to construct populations fitting multiple constraint distributions at genomic scales
- Enrico Siragusa
- Niina Haiminen
- et al.
- 2019
- IEEE/ACM TCBB
Transcriptome characterization and differentially expressed genes under flooding and drought stress in the biomass grasses Phalaris arundinacea and Dactylis glomerata
- Manfred Klaas
- Niina Haiminen
- et al.
- 2019
- Annals of Botany
Signal enrichment with strain-level resolution in metagenomes using topological data analysis
- Aldo Guzmán-Sáenz
- Niina Haiminen
- et al.
- 2019
- BMC Genomics